Indira H. Shrivastava: search on Z-Library

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1

Naja naja oxiana Cobra Venom Cytotoxins CTI and CTII Disrupt Mitochondrial Membrane Integrity: Implications for Basic Three-Fingered Cytotoxins

Gasanov, Sardar E., Shrivastava, Indira H., Israilov, Firuz S., Kim, Aleksandr A., Rylova, Kamila A., Zhang, Boris, Dagda, Ruben K., van der Wel, Patrick

Journal:

Year:

2015

Language:

english

File:

PDF, 7.06 MB

english, 2015

2

Conformational dynamics of helix S6 from Shaker potassium channel: Simulation studies

Joanne N. Bright, Indira H. Shrivastava, Frank S. Cordes, Mark S. P. Sansom

Journal:

Year:

2002

Language:

english

File:

PDF, 257 KB

english, 2002

3

Cross-entropy minimization for refinement of Gaussian basis sets

Shridhar R. Gadre, Sudhir A. Kulkarni, Indira H. Shrivastava

Journal:

Chemical Physics Letters

Year:

1990

Language:

english

File:

PDF, 540 KB

english, 1990

4

Application of rigorous bounds for efficient evaluation of molecular electrostatic potentials

Shridhar R. Gadre, Indira H. Shrivastava, Sudhir A. Kulkarni

Journal:

Chemical Physics Letters

Year:

1990

Language:

english

File:

PDF, 507 KB

english, 1990

5

Topography-driven electrostatic charge models for molecules

Shridhar R. Gadre, Indira H. Shrivastava

Journal:

Chemical Physics Letters

Year:

1993

Language:

english

File:

PDF, 658 KB

english, 1993

6

Basis set dependence of the molecular electrostatic potential topography. A case study of substituted benzenes

Shridhar R. Gadre, Sudhir A. Kulkarni, C.H. Suresh, Indira H. Shrivastava

Journal:

Chemical Physics Letters

Year:

1995

Language:

english

File:

PDF, 599 KB

english, 1995

7

Computation of molecular electrostatic potential: An efficient algorithm and parallelization

Shridhar R. Gadre, Sangeeta Bapat, Indira Shrivastava

Journal:

Computers & Chemistry

Year:

1991

Language:

english

File:

PDF, 419 KB

english, 1991

8

Proline-induced hinges in transmembrane helices: Possible roles in ion channel gating

D. Peter Tieleman, Indira H. Shrivastava, Martin R. Ulmschneider, Mark S.P. Sansom

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 264 KB

english, 2001

9

Fluctuation dynamics analysis of gp120 envelope protein reveals a topologically based communication network

Indira Shrivastava, Judith M. LaLonde

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.19 MB

english, 2010

10

Molecular electrostatic charge models: A topographical approach

Indira H. Shrivastava, Shridhar R. Gadre

Journal:

International Journal of Quantum Chemistry

Year:

1994

Language:

english

File:

PDF, 467 KB

english, 1994

11

Molecular dynamics simulations and KcsA channel gating

Indira H. Shrivastava, Mark S. Sansom

Journal:

European Biophysics Journal

Year:

2002

Language:

english

File:

PDF, 272 KB

english, 2002

12

A general parallel algorithm for the generation of moleular electrostatic potential maps

Shridhar R. Gadre, Sangeeta V. Bapat, K. Sundararajan, Indira H. Shrivastava

Journal:

Chemical Physics Letters

Year:

1990

Language:

english

File:

PDF, 475 KB

english, 1990

13

Dynamics and allosteric potential of the AMPA receptor N-terminal domain

Sukumaran, Madhav, Rossmann, Maxim, Shrivastava, Indira, Dutta, Anindita, Bahar, Ivet, Greger, Ingo H

Journal:

The EMBO Journal

Year:

2011

Language:

english

File:

PDF, 1.54 MB

english, 2011

14

Normal Mode Analysis of Biomolecular Structures: Functional Mechanisms of Membrane Proteins

Bahar, Ivet, Lezon, Timothy R., Bakan, Ahmet, Shrivastava, Indira H.

Journal:

Chemical Reviews

Year:

2010

Language:

english

File:

PDF, 6.50 MB

english, 2010

15

A “critical” appraisal of electrostatic charge models for molecules

Shridhar R. Gadre, Savita S. Pundlik, Indira H. Shrivastava

Journal:

Journal of Chemical Sciences

Year:

1994

Language:

english

File:

PDF, 1.69 MB

english, 1994

16

Ion Channels: Frozen Motion

Mark S.P Sansom, Indira H Shrivastava

Journal:

Current Biology

Year:

2002

Language:

english

File:

PDF, 2.17 MB

english, 2002

17

Simulations of ion channels – watching ions and water move

Mark S.P. Sansom, Indira H. Shrivastava, Kishani M. Ranatunga, Graham R. Smith

Journal:

Trends in Biochemical Sciences

Year:

2000

Language:

english

File:

PDF, 1.03 MB

english, 2000

18

Potassium channels: structures, models, simulations

Mark S.P. Sansom, Indira H. Shrivastava, Joanne N. Bright, John Tate, Charlotte E. Capener, Philip C. Biggin

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2002

Language:

english

File:

PDF, 756 KB

english, 2002

19

A prokaryotic glutamate receptor: homology modelling and molecular dynamics simulations of GluR0

Yalini Arinaminpathy, Philip C. Biggin, Indira H. Shrivastava, Mark S.P. Sansom

Journal:

Year:

2003

Language:

english

File:

PDF, 434 KB

english, 2003

20

Comparative Dynamics of NMDA- and AMPA-Glutamate Receptor N-Terminal Domains

Anindita Dutta, Indira H. Shrivastava, Madhav Sukumaran, Ingo H. Greger, Ivet Bahar

Journal:

Year:

2012

Language:

english

File:

PDF, 2.20 MB

english, 2012

21

Structure and Dynamics of K Channel Pore-Lining Helices: A Comparative Simulation Study

Shrivastava, Indira H., Capener, Charlotte E., Forrest, Lucy R., Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 510 KB

english, 2000

22

Simulations of Ion Permeation Through a Potassium Channel: Molecular Dynamics of KcsA in a Phospholipid Bilayer

Shrivastava, Indira H., Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 498 KB

english, 2000

23

Homology Modeling and Molecular Dynamics Simulation Studies of an Inward Rectifier Potassium Channel

Capener, Charlotte E., Shrivastava, Indira H., Ranatunga, Kishani M., Forrest, Lucy R., Smith, Graham R., Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 863 KB

english, 2000

24

Side-Chain Ionization States in a Potassium Channel

Ranatunga, Kishani M., Shrivastava, Indira H., Smith, Graham R., Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 267 KB

english, 2001

25

K+ versus Na+ Ions in a K Channel Selectivity Filter: A Simulation Study

Shrivastava, Indira H., Peter Tieleman, D., Biggin, Philip C., Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 506 KB

english, 2002

26

Substrate translocation pathway in glutamate transporter: Insights from molecular simulations

Gu, Yan, Shrivastava, Indira H., Amara, Susan G., Bahar, Ivet

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 43 KB

english, 2009

27

Common Mechanism of Pore Opening Shared by Five Different Potassium Channels

Shrivastava, Indira H., Bahar, Ivet

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 1.15 MB

english, 2006

28

A Model of Voltage Gating Developed Using the KvAP Channel Crystal Structure

Shrivastava, Indira H., Durell, Stewart R., Robert Guy, H.

Journal:

Biophysical Journal

Year:

2004

Language:

english

File:

PDF, 931 KB

english, 2004

29

Models of the Structure and Voltage-Gating Mechanism of the Shaker K+ Channel

Durell, Stewart R., Shrivastava, Indira H., Guy, H. Robert

Journal:

Biophysical Journal

Year:

2004

Language:

english

File:

PDF, 752 KB

english, 2004

30

Molecular electrostatic potentials: A topographical study

Gadre, Shridhar R., Kulkarni, Sudhir A., Shrivastava, Indira H.

Journal:

The Journal of Chemical Physics

Year:

1992

Language:

english

File:

PDF, 889 KB

english, 1992

31

Cardiolipin externalization to the outer mitochondrial membrane acts as an elimination signal for mitophagy in neuronal cells

Chu, Charleen T., Ji, Jing, Dagda, Ruben K., Jiang, Jian Fei, Tyurina, Yulia Y., Kapralov, Alexandr A., Tyurin, Vladimir A., Yanamala, Naveena, Shrivastava, Indira H., Mohammadyani, Dariush, Qiang Wan

Journal:

Nature Cell Biology

Year:

2013

Language:

english

File:

PDF, 3.10 MB

english, 2013

32

Shapes and sizes of molecular anions via topographical analysis of electrostatic potential

Gadre, Shridhar R., Shrivastava, Indira H.

Journal:

The Journal of Chemical Physics

Year:

1991

Language:

english

File:

PDF, 642 KB

english, 1991

33

Application of Gaussian Network Model to Elucidate Functional Modes of Motion in a Glutamate Transporter

Shrivastava, Indira, Jiang, Jie, Amara, Susan G., Bahar, Ivet

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

34

Insights into the Mechanism of Release of Substrate in the Inward Facing Glutamate Transporter from Molecular Dynamics Simulations

Shrivastava, Indira, DeChancie, Jason, Bahar, Ivet

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 69 KB

english, 2011

35

Enhanced Dynamics of HIV gp120 Glycoprotein by Small Molecule Binding

Shrivastava, Indira, LaLonde, Judith M.

Journal:

Year:

2011

Language:

english

File:

PDF, 5.06 MB

english, 2011

36

Spontaneous Rearrangement of the β20/β21 Strands in Simulations of Unliganded HIV-1 Glycoprotein, gp120

Shrivastava, Indira H., Wendel, Kaylee, LaLonde, Judith M.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.65 MB

english, 2012

37

Deriving chemical parameters from electrostatic potential maps of molecular anions

Gadre, Shridhar R., Koelmel, Christoph, Shrivastava, Indira H.

Journal:

Inorganic Chemistry

Year:

1992

Language:

english

File:

PDF, 382 KB

english, 1992

38

Use of second-moment constraints for the refinement of determinantal wave functions

Gadre, Shridhar R., Kulkarni, Sudhir A., Shrivastava, Indira H.

Journal:

Physical Review A

Year:

1988

Language:

english

File:

PDF, 137 KB

english, 1988

39

Large collective motions regulate the functional properties of glutamate transporter trimers

Jie Jiang, Indira H. Shrivastava, Spencer D. Watts, Ivet Bahar and Susan G. Amara

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.65 MB

english, 2011

40

Homogenous PCR of Heterogeneous DNA from Phenolic Rich Barks ofTerminaliaSpecies for DNA Based Adulteration Detection

Sharma, Sonal, Sharma, Poojadevi, Yadav, Sheetal, Purohit, Indira, Srivastava, Anshu, Varma, Astha, Shrivastava, Neeta

Journal:

Proceedings of the National Academy of Sciences, India Section B: Biological Sciences

Year:

2017

Language:

english

File:

PDF, 1.52 MB

english, 2017

41

Lattice Model for Rapidly Folding Protein-Like Heteropolymers

Indira Shrivastava, Saraswathi Vishveshwara, Marek Cieplak, Amos Maritan and Jayanth R. Banavar

Journal:

Proceedings of the National Academy of Sciences

Year:

1995

Language:

english

File:

PDF, 756 KB

english, 1995

42

Redox-dependent regulation of hepatocyte AIM2 inflammasome activation in sterile liver injury in mice

Sun, Qian, Loughran, Patricia, Shapiro, Richard, Shrivastava, Indira H., Antoine, Daniel J., Li, Tunliang, Yan, Zhengzheng, Fan, Jie, Billiar, Timothy R., Scott, Melanie J.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.38 MB

english, 2016

43

Regulation of XIAP Turnover Reveals a Role for USP11 in Promotion of Tumorigenesis

Zhou, Zhuan, Luo, Aiping, Shrivastava, Indira, He, Mingjing, Huang, Yi, Bahar, Ivet, Liu, Zhihua, Wan, Yong

Journal:

Year:

2017

Language:

english

File:

PDF, 4.91 MB

english, 2017

44

“Only a life lived for others is worth living:” Redox Signaling by Oxygenated Phospholipids in Cell Fate Decisions

Tyurina, Yulia Y., Shrivastava, Indira, Tyurin, Vladimir A, Mao, Gaowei, Dar, Haider H, Watkins, Simon, Epperly, Michael, Bahar, Ivet, Shvedova, Anna A, Pitt, Bruce, Wenzel, Sally E, Mallampalli, Rama

Journal:

Antioxidants & Redox Signaling

Year:

2017

Language:

english

File:

PDF, 1.98 MB

english, 2017

45

Erratum: Shapes and sizes of molecular anions via topographical analysis of electrostatic potential [J. Chem. Phys. 9 4 , 4384 (1991)]

Gadre, Shridhar R., Shrivastava, Indira H.

Journal:

The Journal of Chemical Physics

Year:

1991

Language:

english

File:

PDF, 268 KB

english, 1991

46

Empowerment of 15-lipoxygenase catalytic competence in selective oxidation of membrane ETE-PE to ferroptotic death signals, HpETE-PE

Anthonymuthu, Tamil S., Kenny, Elizabeth M, Shrivastava, Indira H., Tyurina, Yulia Y, Hier, Zachary E, Ting, Hsiu-Chi, Dar, Haider, Tyurin, Vladimir A, Nesterova, Anastasia, Amoscato, Andrew A., Mikul

Journal:

Journal of the American Chemical Society

Year:

2018

Language:

english

File:

PDF, 1.68 MB

english, 2018

47

Characterization of differential dynamics, specificity, and allostery of lipoxygenase family members

Mikulska-Ruminska, Karolina, Shrivastava, Indira H., Krieger, James, Zhang, She, Li, Hongchun, Bayir, Hulya, Wenzel, Sally E., VanDemark, Andrew P., Kagan, Valerian E., Bahar, Ivet

Journal:

Journal of Chemical Information and Modeling

Year:

2019

Language:

english

File:

PDF, 5.50 MB

english, 2019

48

Naja mossambica mossambica Cobra Cardiotoxin Targets Mitochondria to Disrupt Mitochondrial Membrane Structure and Function

Zhang, Boris, Li, Feng, Chen, Zhengyao, Shrivastava, Indira, Gasanoff, Edward, Dagda, Ruben

Journal:

Year:

2019

File:

PDF, 20.24 MB

2019

49

Pseudomonas aeruginosa utilizes host polyunsaturated phosphatidylethanolamines to trigger theft-ferroptosis in bronchial epithelium

Dar, Haider H., Tyurina, Yulia Y., Mikulska-Ruminska, Karolina, Shrivastava, Indira, Ting, Hsiu-Chi, Tyurin, Vladimir A., Krieger, James, St. Croix, Claudette M., Watkins, Simon, Bayir, Erkan, Mao, Ga

Journal:

Journal of Clinical Investigation

Year:

2018

Language:

english

File:

PDF, 9.39 MB

english, 2018

50

PEBP1 acts as a rheostat between prosurvival autophagy and ferroptotic death in asthmatic epithelial cells

Zhao, Jinming, Dar, Haider H., Deng, Yanhan, St. Croix, Claudette M., Li, Zhipeng, Minami, Yoshinori, Shrivastava, Indira H., Tyurina, Yulia Y., Etling, Emily, Rosenbaum, Joel C., Nagasaki, Tadao, Tru

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 1.36 MB

2020

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